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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32038477_32041193_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32038477 - 32041193
Intron Length:
2717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGCT
5'SS Class:
major
3'SS Sequence:
CCTTGCTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAA
U12 Branch Point Sequence:
TATGCTTGTATT
Flanking Amino Acid:
LPDDAPHKLEVRLVPVSFED
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.4
37.1
Major BPS
65.6
0.39
0.9
67.3
29.6
Major PPT
67.8
0.4
1
67.5
32.8
Minor 5ss
31.9
-2.1
3.6
48.1
47.5
Minor BPS
48.6
-0
1.9
69.43
42.1

Associated Gene:

Gene:
ATE1
Ensembl Gene ID:
ENSAPLG00000012854
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013449
31967349 - 32052293
84945