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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32047306_32048258_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32047306 - 32048258
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TACTTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
CTTTACTTATTT
Flanking Amino Acid:
KGDVSKVVSEEEPMDSHIED
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
82.8
0.74
0.8
76.6
36.2
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
62.7
0.48
1.8
80.67
41.5

Associated Gene:

Gene:
ATE1
Ensembl Gene ID:
ENSAPLG00000012854
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042394
31967349 - 32052293
84945
ENSAPLT00000019697
31967349 - 32052293
84945
ENSAPLT00000013449
31967349 - 32052293
84945