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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32048363_32049067_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32048363 - 32049067
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
GTAATCATAACT
Flanking Amino Acid:
NQTCCPQYTIRCQALRFQTS
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
59
0.36
1.7
75.56
40.3

Associated Gene:

Gene:
ATE1
Ensembl Gene ID:
ENSAPLG00000012854
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042394
31967349 - 32052293
84945
ENSAPLT00000019697
31967349 - 32052293
84945
ENSAPLT00000013449
31967349 - 32052293
84945