About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32049131_32050620_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32049131 - 32050620
Intron Length:
1490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATTT
Flanking Amino Acid:
YQDLIDRGWRRSGKYVYKPI
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89
0.88
0.7
89.1
27.6
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
57.4
0.31
1.8
77.92
38.5

Associated Gene:

Gene:
ATE1
Ensembl Gene ID:
ENSAPLG00000012854
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042394
31967349 - 32052293
84945
ENSAPLT00000019697
31967349 - 32052293
84945
ENSAPLT00000013449
31967349 - 32052293
84945