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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32084195_32085034_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32084195 - 32085034
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGTGTC
5'SS Class:
major
3'SS Sequence:
CCTTCTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACTTAGAAAATT
Flanking Amino Acid:
MKCLEQERSFFNCCVTL
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
73.6
36
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.7
0.69
0.7
73.1
31.8
Minor 5ss
37.9
-1.4
3.5
52
39.4
Minor BPS
39.2
-0.7
2.4
59.78
43.9

Associated Gene:

Gene:
TACC2
Ensembl Gene ID:
ENSAPLG00000013559
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037756
32084039 - 32194665
110627
ENSAPLT00000026221
32084039 - 32194665
110627
ENSAPLT00000023959
32084039 - 32195359
111321
ENSAPLT00000042454
32084039 - 32195359
111321
ENSAPLT00000020629
32084039 - 32194665
110627
ENSAPLT00000039561
32084039 - 32194665
110627