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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32085113_32086508_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32085113 - 32086508
Intron Length:
1396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CGTTTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GAATTTTTAAAT
Flanking Amino Acid:
GNENSSAENQSDVPNANKVI
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.1
0.77
0.8
81.1
35.5
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
62.8
0.48
1.3
71.89
38.5

Associated Gene:

Gene:
TACC2
Ensembl Gene ID:
ENSAPLG00000013559
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037756
32084039 - 32194665
110627
ENSAPLT00000047897
32079948 - 32194665
114718
ENSAPLT00000037356
32085035 - 32195359
110325
ENSAPLT00000042454
32084039 - 32195359
111321
ENSAPLT00000023959
32084039 - 32195359
111321
ENSAPLT00000039561
32084039 - 32194665
110627
ENSAPLT00000020629
32084039 - 32194665
110627
ENSAPLT00000038168
32079948 - 32194665
114718