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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32086569_32096567_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32086569 - 32096567
Intron Length:
9999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGGAT
5'SS Class:
major
3'SS Sequence:
TTCTTCATTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTTCTTCATT
Flanking Amino Acid:
LMPPSQGTQQSTPQDSELDH
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
65.9
39.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81.5
0.71
0.8
74.5
35
Minor 5ss
29.6
-2.3
3.8
46
49.3
Minor BPS
66.4
0.6
1.7
82.74
39.5

Associated Gene:

Gene:
TACC2
Ensembl Gene ID:
ENSAPLG00000013559
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037756
32084039 - 32194665
110627
ENSAPLT00000047897
32079948 - 32194665
114718
ENSAPLT00000037356
32085035 - 32195359
110325
ENSAPLT00000042454
32084039 - 32195359
111321
ENSAPLT00000023959
32084039 - 32195359
111321
ENSAPLT00000039561
32084039 - 32194665
110627
ENSAPLT00000020629
32084039 - 32194665
110627
ENSAPLT00000038168
32079948 - 32194665
114718