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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3210157_3211188_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3210157 - 3211188
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATGAA
U12 Branch Point Sequence:
AGGCTATGAACC
Flanking Amino Acid:
SIGSMSDFWVYAQGPLLDNL
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
63.1
0.33
1.1
55.4
40.3
Major PPT
69.9
0.45
0.8
64.8
29.6
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
46.4
-0.2
1.7
53.28
37.3

Associated Gene:

Gene:
PKD2L1
Ensembl Gene ID:
ENSAPLG00000015842
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016514
3200475 - 3215072
14598