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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32110355_32123980_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32110355 - 32123980
Intron Length:
13626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTACT
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CTTTTTCCATGT
Flanking Amino Acid:
DVAVAGLPTESPPGPGDDIQ
Intron Amino Acid Position:
2014

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79
34.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
85.2
0.79
0.7
81
24.1
Minor 5ss
44.5
-0.6
2.5
61.4
42.8
Minor BPS
39.7
-0.7
2.1
59.65
44.3

Associated Gene:

Gene:
TACC2
Ensembl Gene ID:
ENSAPLG00000013559
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037756
32084039 - 32194665
110627
ENSAPLT00000026221
32084039 - 32194665
110627
ENSAPLT00000047897
32079948 - 32194665
114718
ENSAPLT00000023959
32084039 - 32195359
111321
ENSAPLT00000039561
32084039 - 32194665
110627
ENSAPLT00000020629
32084039 - 32194665
110627
ENSAPLT00000038168
32079948 - 32194665
114718