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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32110355_32129967_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32110355 - 32129967
Intron Length:
19613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTACT
5'SS Class:
major
3'SS Sequence:
GATTATTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTCACCTTACAA
Flanking Amino Acid:
DVAVAGLPTESTSKPDSCDE
Intron Amino Acid Position:
2014

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79
34.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79.9
0.67
0.9
72.7
41.8
Minor 5ss
44.5
-0.6
2.5
61.4
42.8
Minor BPS
57.6
0.24
1.8
69.32
42.8

Associated Gene:

Gene:
TACC2
Ensembl Gene ID:
ENSAPLG00000013559
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042454
32084039 - 32195359
111321