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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3211317_3212619_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3211317 - 3212619
Intron Length:
1303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAG
U12 Branch Point Sequence:
TAAGAGAGGACC
Flanking Amino Acid:
YIVFLVDICLLTYGMTSSNA
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
64.7
0.37
1.5
63.7
43.9
Major PPT
81.3
0.7
0.7
80.8
24.5
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
33.4
-1.3
2.2
42.17
37.9

Associated Gene:

Gene:
PKD2L1
Ensembl Gene ID:
ENSAPLG00000015842
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016514
3200475 - 3215072
14598