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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32124107_32129967_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32124107 - 32129967
Intron Length:
5861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTGA
5'SS Class:
major
3'SS Sequence:
GATTATTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTCACCTTACAA
Flanking Amino Acid:
PGDAAELTAASTSKPDSCDE
Intron Amino Acid Position:
2056

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
61.2
39.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79.9
0.67
0.9
72.7
41.8
Minor 5ss
42.3
-0.9
3.1
56.3
47.9
Minor BPS
57.6
0.24
1.8
69.32
42.8

Associated Gene:

Gene:
TACC2
Ensembl Gene ID:
ENSAPLG00000013559
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037356
32085035 - 32195359
110325
ENSAPLT00000026221
32084039 - 32194665
110627
ENSAPLT00000047897
32079948 - 32194665
114718
ENSAPLT00000023959
32084039 - 32195359
111321
ENSAPLT00000039561
32084039 - 32194665
110627
ENSAPLT00000020629
32084039 - 32194665
110627
ENSAPLT00000037756
32084039 - 32194665
110627