Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32163422_32167698_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32163422 - 32167698

Intron Length:

4277

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTAAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

ATTCTATTTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ACTGTTTTAATT

Flanking Amino Acid:

PAKKKKTPLKTDTFRVKKSP

Intron Amino Acid Position:

2592

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

1.2

80.2

30.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

80.6

0.69

0.8

78.5

34.3

Minor 5ss

40.9

-1

2.8

48.3

41.3

Minor BPS

63.6

0.5

1.3

72.81

39.3

Associated Gene:

Gene:

TACC2

Ensembl Gene ID:

ENSAPLG00000013559

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038168

32079948 - 32194665

114718

ENSAPLT00000026221

32084039 - 32194665

110627

ENSAPLT00000020629

32084039 - 32194665

110627

ENSAPLT00000047897

32079948 - 32194665

114718