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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32175833_32181620_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
32175833 - 32181620
Intron Length:
5788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTAGC
5'SS Class:
major
3'SS Sequence:
AACAAACACACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTATTTAAAA
Flanking Amino Acid:
NPPVFAQKLQREPAIPADVS
Intron Amino Acid Position:
765

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
70
40.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
49.9
-0
1
40.1
37.3
Minor 5ss
38.5
-1.3
2.4
46.6
41.7
Minor BPS
64
0.44
1.6
73.54
38.1

Associated Gene:

Gene:
TACC2
Ensembl Gene ID:
ENSAPLG00000013559
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037756
32084039 - 32194665
110627
ENSAPLT00000037356
32085035 - 32195359
110325
ENSAPLT00000014159
32140890 - 32195510
54621