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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32176836_32181620_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
32176836 - 32181620
Intron Length:
4785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCTGTT
5'SS Class:
major
3'SS Sequence:
AACAAACACACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTATTTAAAA
Flanking Amino Acid:
LSSFRSLDAEREPAIPADVS
Intron Amino Acid Position:
2876

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
77.9
36.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
49.9
-0
1
40.1
37.3
Minor 5ss
51
0.03
2.9
75.5
40.6
Minor BPS
64
0.44
1.6
73.54
38.1

Associated Gene:

Gene:
TACC2
Ensembl Gene ID:
ENSAPLG00000013559
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020629
32084039 - 32194665
110627
ENSAPLT00000039561
32084039 - 32194665
110627
ENSAPLT00000038168
32079948 - 32194665
114718
ENSAPLT00000026221
32084039 - 32194665
110627
ENSAPLT00000047897
32079948 - 32194665
114718
ENSAPLT00000023959
32084039 - 32195359
111321
ENSAPLT00000042454
32084039 - 32195359
111321