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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32194387_32195293_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32194387 - 32195293
Intron Length:
907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAACG
Flanking Amino Acid:
DALERTLEQKNKEIEELTKI
Intron Amino Acid Position:
983

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
72.5
0.57
1.6
80.09
35.6

Associated Gene:

Gene:
TACC2
Ensembl Gene ID:
ENSAPLG00000013559
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042454
32084039 - 32195359
111321
ENSAPLT00000037356
32085035 - 32195359
110325
ENSAPLT00000023959
32084039 - 32195359
111321
ENSAPLT00000014159
32140890 - 32195510
54621