Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32238352_32249199_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

32238352 - 32249199

Intron Length:

10848

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTGAGTGCC

5'SS Class:

major

3'SS Sequence:

TTTTGTCCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATAAC

U12 Branch Point Sequence:

CCTCATATAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.1

62.6

36.1

Major BPS

69.1

0.48

32.1

Major PPT

0.83

0.7

81.7

30.4

Minor 5ss

31.4

-2.1

3.2

45.9

42.3

Minor BPS

48.8

-0

1.8

67.09

43.5

Associated Gene:

Gene:

PLEKHA1

Ensembl Gene ID:

ENSAPLG00000013754

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033661

32237428 - 32263029

25602

ENSAPLT00000027582

32237428 - 32265647

28220

ENSAPLT00000014379

32237428 - 32265647

28220