About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32255132_32255827_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
32255132 - 32255827
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
GTTTGACTTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CTTACATTGATT
Flanking Amino Acid:
NVLNKATKITVPKQSDPLCQ
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72
39.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
56.7
0.15
1.7
66.7
44.1
Minor 5ss
38.1
-1.3
3.1
55.9
42.3
Minor BPS
59.7
0.39
1.7
77
39.7

Associated Gene:

Gene:
PLEKHA1
Ensembl Gene ID:
ENSAPLG00000013754
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033661
32237428 - 32263029
25602
ENSAPLT00000027582
32237428 - 32265647
28220
ENSAPLT00000014379
32237428 - 32265647
28220