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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32255960_32256912_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32255960 - 32256912
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAATAT
U12 Branch Point Sequence:
AAAACCTGAAAA
Flanking Amino Acid:
GGVPIITPTQKEEVNECSEG
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
86.5
28.6
Major BPS
50.9
0.02
1.1
47.4
35.7
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
39.5
-1.2
3.1
58.2
46
Minor BPS
52.1
0.06
1.6
59.95
38.4

Associated Gene:

Gene:
PLEKHA1
Ensembl Gene ID:
ENSAPLG00000013754
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033661
32237428 - 32263029
25602
ENSAPLT00000027582
32237428 - 32265647
28220
ENSAPLT00000014379
32237428 - 32265647
28220