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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32257057_32257285_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32257057 - 32257285
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
AGYCVKQGAVMKNWKRRYFQ
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
PLEKHA1
Ensembl Gene ID:
ENSAPLG00000013754
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033661
32237428 - 32263029
25602
ENSAPLT00000027582
32237428 - 32265647
28220
ENSAPLT00000014379
32237428 - 32265647
28220