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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32257355_32259594_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32257355 - 32259594
Intron Length:
2240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTATTTTTACCT
Flanking Amino Acid:
NTIGYFKSELEKEPLRVIPL
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.1
0.74
0.8
77.2
36.9
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
62.5
0.47
1.6
76.8
39.9

Associated Gene:

Gene:
PLEKHA1
Ensembl Gene ID:
ENSAPLG00000013754
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033661
32237428 - 32263029
25602
ENSAPLT00000027582
32237428 - 32265647
28220
ENSAPLT00000014379
32237428 - 32265647
28220