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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32260211_32261472_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32260211 - 32261472
Intron Length:
1262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTAACCATATCT
Flanking Amino Acid:
VTTSRTFYVQADSPEDMHSW
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
77.1
0.61
1
70
45
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
56.3
0.28
1.9
79.16
42.2

Associated Gene:

Gene:
PLEKHA1
Ensembl Gene ID:
ENSAPLG00000013754
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033661
32237428 - 32263029
25602
ENSAPLT00000027582
32237428 - 32265647
28220
ENSAPLT00000014379
32237428 - 32265647
28220