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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32262760_32262936_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32262760 - 32262936
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATACATC
5'SS Class:
major
3'SS Sequence:
CATTCACTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATATCATTCACT
Flanking Amino Acid:
ARRLSNPCIQRFALFFLLLK
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
71.2
38.9
Major BPS
79.4
0.73
1
80.1
32
Major PPT
77.3
0.61
0.9
69.6
35.4
Minor 5ss
49.4
-0
2.6
68.8
42.2
Minor BPS
59.8
0.39
2
80.84
40.3

Associated Gene:

Gene:
PLEKHA1
Ensembl Gene ID:
ENSAPLG00000013754
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033661
32237428 - 32263029
25602