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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32274190_32288077_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32274190 - 32288077
Intron Length:
13888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGGA
5'SS Class:
major
3'SS Sequence:
GTTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AACTCATGACAT
Flanking Amino Acid:
IAIQRGACGQGQEHPNSLRH
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64
42.4
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
83.5
0.75
0.9
80.8
36.8
Minor 5ss
28.1
-2.5
3.4
29
43.5
Minor BPS
43.5
-0.4
2
59.34
43.1

Associated Gene:

Gene:
HTRA1
Ensembl Gene ID:
ENSAPLG00000014182
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014805
32273709 - 32303518
29810