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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32299470_32300807_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32299470 - 32300807
Intron Length:
1338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AATTTCTTATTT
Flanking Amino Acid:
GNSGGPLVNLDGEVIGINTL
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80.5
0.69
0.8
73
37.2
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
66.2
0.59
1.5
79.09
37.2

Associated Gene:

Gene:
HTRA1
Ensembl Gene ID:
ENSAPLG00000014182
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014805
32273709 - 32303518
29810