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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32300923_32301037_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32300923 - 32301037
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCCTTTTTATA
Flanking Amino Acid:
LTESHDRQAKGKAITKKKYI
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
71.9
34
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
87
0.83
0.6
83.4
25
Minor 5ss
37.1
-1.5
3.3
49.8
46.8
Minor BPS
51.8
0.05
1.6
63.36
37.2

Associated Gene:

Gene:
HTRA1
Ensembl Gene ID:
ENSAPLG00000014182
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014805
32273709 - 32303518
29810