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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32301096_32301658_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32301096 - 32301658
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCATTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTTTCTTCATT
Flanking Amino Acid:
IGIRMMSLTPSKARELKDRH
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
84.8
0.78
0.8
76.5
37.3
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
67.5
0.63
1.7
83.97
37.3

Associated Gene:

Gene:
HTRA1
Ensembl Gene ID:
ENSAPLG00000014182
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014805
32273709 - 32303518
29810