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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32301755_32303203_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32301755 - 32303203
Intron Length:
1449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTTGG
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTGTAGTAATT
Flanking Amino Acid:
IEVIPETPAEAGGLKDNDVI
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.4
60.6
46.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
40.5
-1.1
2.8
44.8
43.4
Minor BPS
46.7
-0.1
2.2
70.57
41

Associated Gene:

Gene:
HTRA1
Ensembl Gene ID:
ENSAPLG00000014182
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014805
32273709 - 32303518
29810