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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32303323_32303411_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32303323 - 32303411
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAACGAAG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
DSTLNMVVRRALDCLYSLCA
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
60.5
45.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
36.7
-1.5
3.1
39.8
46
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
HTRA1
Ensembl Gene ID:
ENSAPLG00000014182
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014805
32273709 - 32303518
29810