Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32316030_32317583_F

Intron Information:

Intron Rank:

109221

Intron Class:

major

Intron Phase:

Intron Coordinates:

32316030 - 32317583

Intron Length:

1554

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGAGT

5'SS Class:

strong_major

3'SS Sequence:

GTTTGGACACCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCAAAT

U12 Branch Point Sequence:

CTGCTTGCAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

75.8

39.8

Major BPS

62.1

0.3

1.2

67.3

37.8

Major PPT

62.2

0.28

1.1

52.8

45.9

Minor 5ss

33.3

-1.9

3.3

48.8

Minor BPS

39.6

-0.7

2.1

53.81

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014685

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015303

32315583 - 32322159

6577

ENSAPLT00000046844

32315583 - 32321512

5930

ENSAPLT00000031932

32315583 - 32326322

10740