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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32317605_32319917_F

Intron Information:

Intron Rank:
109222
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
32317605 - 32319917
Intron Length:
2313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTAA
5'SS Class:
strong_major
3'SS Sequence:
AAATTAGGAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCAAAA
U12 Branch Point Sequence:
TTCTCCAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
80.2
30.6
Major BPS
55.5
0.14
1
61.5
32.5
Major PPT
48.7
-0
1.1
41
42.2
Minor 5ss
45.1
-0.5
2.6
58.1
46.5
Minor BPS
59
0.36
2
80.51
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031932
32315583 - 32326322
10740
ENSAPLT00000015303
32315583 - 32322159
6577
ENSAPLT00000046844
32315583 - 32321512
5930