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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32321218_32323714_F

Intron Information:

Intron Rank:
109232
Intron Class:
major
Intron Phase:
Intron Coordinates:
32321218 - 32323714
Intron Length:
2497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTTCTCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.5
39.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
87
0.83
0.7
84.7
28.8
Minor 5ss
38.3
-1.3
3.4
56.2
48
Minor BPS
54.7
0.23
1.9
77.23
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031932
32315583 - 32326322
10740