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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32323745_32325596_F

Intron Information:

Intron Rank:
109233
Intron Class:
major
Intron Phase:
Intron Coordinates:
32323745 - 32325596
Intron Length:
1852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TCATCCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCAAATGTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
72.9
0.52
0.8
65.6
35.8
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
45.4
-0.3
2.1
56.59
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031932
32315583 - 32326322
10740