Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32367659_32378119_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

32367659 - 32378119

Intron Length:

10461

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TGT|GCAGGTAGG

5'SS Class:

major

3'SS Sequence:

CAGCTACTCTAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTGAGAC

U12 Branch Point Sequence:

TATCCCTGGAAG

Flanking Amino Acid:

AHSEDAGVICGWSGFLLSPK

Intron Amino Acid Position:

210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.9

0.26

1.4

61.2

43.1

Major BPS

46.7

-0.2

1.2

41.8

39.2

Major PPT

55.1

0.11

1.1

56.9

37.7

Minor 5ss

25.4

-2.8

3.9

33.2

42.1

Minor BPS

50.7

-0.1

1.7

59.54

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028379

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045481

32360349 - 32408781

48433