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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3237031_3243697_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3237031 - 3243697
Intron Length:
6667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AACACTTTAATT
Flanking Amino Acid:
PSAKIQTLAWAVLCFVVSAL
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
71.6
40.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
86
0.81
0.8
78
35.8
Minor 5ss
39.2
-1.2
2.8
41.9
44.5
Minor BPS
65.5
0.56
1.3
72.07
39.2

Associated Gene:

Gene:
SCD
Ensembl Gene ID:
ENSAPLG00000015665
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016337
3233013 - 3250354
17342