About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32382210_32384227_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32382210 - 32384227
Intron Length:
2018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACAGT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTCTCTTTCACA
Flanking Amino Acid:
SRHDASVICSEVSLRLINGR
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
66.2
45.1
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
87.1
0.83
0.7
83
25.6
Minor 5ss
39.4
-1.2
3.3
58
46.3
Minor BPS
68.9
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028379
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045481
32360349 - 32408781
48433