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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32384540_32385977_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32384540 - 32385977
Intron Length:
1438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
CTGTGTGTAATT
Flanking Amino Acid:
HREDAGVRCSEMSLRLENGD
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
79
37.9
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
70.3
0.46
1
65.4
41.1
Minor 5ss
42.7
-0.8
3
57.9
46.7
Minor BPS
46.4
-0.2
2.3
66.43
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028379
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045481
32360349 - 32408781
48433