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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32420903_32421178_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
32420903 - 32421178
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAC
U12 Branch Point Sequence:
TGTTTTTTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
62.4
0.31
1.2
72.4
34.6
Major PPT
80
0.67
0.9
77.6
35.5
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
76.4
0.82
1
79.24
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002332
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002365
32420323 - 32426404
6082