About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32421394_32422157_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32421394 - 32422157
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
GTTGTGTTACCA
Flanking Amino Acid:
VFYYFFSPETTHCGGSLTGP
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
93.1
0.97
0.6
92
18.6
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
46.3
-0.2
2.3
62.92
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002332
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002365
32420323 - 32426404
6082