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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32422303_32423016_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32422303 - 32423016
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTCTGTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
TTTTCTATCATT
Flanking Amino Acid:
SKINLEFKDLFLELDQNCQF
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
74
30.8
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
82.1
0.72
0.8
75.9
32.8
Minor 5ss
32.2
-2
2.7
39.2
40.5
Minor BPS
58.9
0.36
2
84.42
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002332
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002365
32420323 - 32426404
6082