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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32423238_32423960_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32423238 - 32423960
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
CTTTCAATGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTCTTTCAAT
Flanking Amino Acid:
SILPDPPEPDTSLTCSSDRL
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.6
34.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71
0.47
1
66.8
38.2
Minor 5ss
38.5
-1.3
3.3
54.7
43.6
Minor BPS
61.2
0.43
1.9
80.63
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002332
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002365
32420323 - 32426404
6082