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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32424963_32425265_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32424963 - 32425265
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
AATTCTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
ACCACTTTAACA
Flanking Amino Acid:
GSVTYDLIRSGCNKDDTVVT
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.5
40.6
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
76.6
0.6
1
69.9
40.5
Minor 5ss
37.5
-1.4
3.3
49.3
46.4
Minor BPS
65.7
0.49
1.3
65.99
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002332
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002365
32420323 - 32426404
6082