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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32429799_32430110_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32429799 - 32430110
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGCCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAATATTTAAGT
Flanking Amino Acid:
LMDMVRYQQKNSSPLGDKLS
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.7
0.58
0.9
74.7
34.9
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
58.6
0.35
1.8
75.03
41.4

Associated Gene:

Gene:
C10orf88
Ensembl Gene ID:
ENSAPLG00000018529
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046848
32427694 - 32432191
4498