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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32430960_32431688_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32430960 - 32431688
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTATTTTATTT
Flanking Amino Acid:
GESLGAAGPGGETEKVTLYK
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.4
0.86
0.7
85
29.6
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
54.8
0.23
1.6
71.35
40.7

Associated Gene:

Gene:
C10orf88
Ensembl Gene ID:
ENSAPLG00000018529
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046848
32427694 - 32432191
4498