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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32433738_32435672_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32433738 - 32435672
Intron Length:
1935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCTTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GGTTCCTTAGAA
Flanking Amino Acid:
TLTGNSFGIKGVSSEEMSRV
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
79
37.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
80.3
0.68
0.8
78.2
34.6
Minor 5ss
48.7
-0.1
3.1
73.3
43.6
Minor BPS
62.2
0.38
1.7
70.9
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015412
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040306
32433668 - 32448766
15099
ENSAPLT00000016125
32433668 - 32449054
15387