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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32437045_32437564_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32437045 - 32437564
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AGACTCTTAAAA
Flanking Amino Acid:
GTYLLTLKKNKDLVSKDFML
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.9
31.7
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
42.2
-0.9
3.2
57.4
41.7
Minor BPS
58.5
0.26
1.4
62.49
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015412
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040306
32433668 - 32448766
15099
ENSAPLT00000016125
32433668 - 32449054
15387