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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3243829_3246729_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3243829 - 3246729
Intron Length:
2901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAG
U12 Branch Point Sequence:
CTGGCCCTAAGT
Flanking Amino Acid:
LTIANSVAFQNDIYEWVRDH
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
48.3
-0.1
1.5
55.2
38.9
Major PPT
79.7
0.67
0.8
72.8
32
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
48.6
-0
2.1
67.97
48.6

Associated Gene:

Gene:
SCD
Ensembl Gene ID:
ENSAPLG00000015665
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016337
3233013 - 3250354
17342