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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32440463_32440768_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32440463 - 32440768
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTCAG
5'SS Class:
major
3'SS Sequence:
TATTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
TVELINYVDGMYRALNIQIV
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
59.7
46.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.6
0.91
0.7
89.2
27.2
Minor 5ss
31.7
-2.1
3.1
32
42.5
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015412
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040306
32433668 - 32448766
15099
ENSAPLT00000016125
32433668 - 32449054
15387