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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32441459_32442445_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32441459 - 32442445
Intron Length:
987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
TTCTCTTCATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TAATTTTTAACA
Flanking Amino Acid:
SHVQGGSISTLDHSNLLRHA
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
68.7
42
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.4
0.62
0.8
78.5
28.7
Minor 5ss
39
-1.2
2.7
53.9
42.7
Minor BPS
75.4
0.79
1.1
76.96
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015412
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040306
32433668 - 32448766
15099
ENSAPLT00000016125
32433668 - 32449054
15387