Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32444574_32444746_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32444574 - 32444746

Intron Length:

173

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCTAT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTGGTTCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAG

U12 Branch Point Sequence:

TGTTGCAAAATA

Flanking Amino Acid:

AQGLCCKNCKFKVAGTECRS

Intron Amino Acid Position:

469

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

74.9

38.1

Major BPS

59.6

0.24

1.5

57.3

41.7

Major PPT

73.4

0.53

0.9

65.1

41.2

Minor 5ss

44.1

-0.6

3.2

63.6

48.1

Minor BPS

46.5

-0.2

2.3

64.78

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015412

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040306

32433668 - 32448766

15099

ENSAPLT00000016125

32433668 - 32449054

15387